PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025222.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 938aa    MW: 105668 Da    PI: 7.4621
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025222.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11621e-50301463118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e ++rwl+++ei+a+L n++ +++  ++ + pksg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++n+tf rrcy
  CCG025222.1  30 EEsRTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNQTFVRRCY 127
                  4459********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  wlL+++le+ivlvhy+e++
  CCG025222.1 128 WLLDKSLEHIVLVHYRETQ 146
                  ****************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.32225151IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-7228146IPR005559CG-1 DNA-binding domain
PfamPF038597.4E-4532144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.96E-8376476IPR014756Immunoglobulin E-set
CDDcd002042.33E-15557684No hitNo description
Gene3DG3DSA:1.25.40.205.6E-16574687IPR020683Ankyrin repeat-containing domain
PfamPF127968.9E-7574654IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.82E-17575687IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.884592684IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.701625657IPR002110Ankyrin repeat
SMARTSM002484.0E-6625654IPR002110Ankyrin repeat
SMARTSM002484600664694IPR002110Ankyrin repeat
SuperFamilySSF525401.65E-6735839IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001536788810IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.364789818IPR000048IQ motif, EF-hand binding site
SMARTSM000153.4E-4811833IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.615812836IPR000048IQ motif, EF-hand binding site
PfamPF006125.8E-4815833IPR000048IQ motif, EF-hand binding site
SMARTSM0001563891913IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.053893921IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MESRFPDRLI GSEIHGFHSL RDLDVLNIME ESRTRWLRPN EIHAMLCNYK YFTINVKPVN  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNQ  120
TFVRRCYWLL DKSLEHIVLV HYRETQEGSP ATPVNSHSSS VSDQSAPRLL SEEFDSGAAS  180
AYDSSEKDLG SSDSLTVRSH AMKLHELNTL EWDELVTNDP GNLIPPGRDK IPCFDGQNRI  240
AVNGSVNDGG ILSGYHLSAE MSTLDNLTES IVRGGNTQFN SPDNVYSQLT SAQVNSDAQR  300
KGSIVPGTSD SLNNLFNDGL QSQDSFGRWM SSIIDHSPCS VDDAVLESSI SSGHDSFASP  360
GIDQHQSSVQ EQTFIITDFS PAWAFSNETT KVYFLFIQSS VAIPVILVTG YFHEQYQHLA  420
KSNLFCICGD AFVRAEIVQV GVYSCMLPSH SPGLVNLCLS LDGLESTSQI LNFEYRAPSV  480
HDPVVSSEDK SKWEEFHLQM RLAYLLFSTS KTLDVVSNKL SLTNLKEAKK FALKTSNISN  540
SWAYLIKAIE DGGISVAQAK DGFFELYLKN KIKEWLLERV LEGCKTTGYD AQGLGVIHLC  600
AIIGYTWAVY LFSWSGLSLD FRDKHGWTAL HWAAYYGREK MVGALLSAGA KPNLVTDPTK  660
ENPGGCTPAD LASAKGYDGL AAYLSEKALV AQFESMITAG NVTGSLPTTA TNTVNSENLS  720
EEELYLKDTL AAYRTVADAA ARIQVAFREH SLKVRTKAVQ SSSPEDEARN IIAAMKIQHA  780
FRNYDSKKKM AAAARIQHRF RSWKMRRDFL NMRHKTIKIQ AAFRGFQVRR QYRKIIWSVG  840
VVEKAILRWR LKRRGFRGLR VEPVEAVVDQ GHDSDTEEDF YKISQKQAEE RVERSVIRVQ  900
AMFRSKKAQE EYWRMKLTHS QAKVEYEGLL DPDMNVDK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2081390.0AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009959.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X1
RefseqXP_011009967.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLB9HWX40.0B9HWX4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators